Scientific production

Here we list the recent (since 2015) publications of the Collaboratory members. In order to provide a comprehensive oveview of our scientific interest and output we include the publications based on the work done at CRI, as well as all publication from this period co-authored by our current Fellows and researchers.

Publications 2021-2015

2021

  • Greshake Tzovaras B, Senabre Hidalgo E, Alexiou K, et al. Quantified Flu: an individual-centered approach to gaining sickness-related insights from wearable data. medRxiv. Published online March 12, 2021:2021.03.10.21252242. doi:10.1101/2021.03.10.21252242
  • Friedrich P, Forkel SJ, Amiez C, et al. Imaging evolution of the primate brain: the next frontier? Neuroimage. 2021;228:117685. doi:10.1016/j.neuroimage.2020.117685
  • Messinger A, Sirmpilatze N, Heuer K, et al. A collaborative resource platform for non-human primate neuroimaging. Neuroimage. 2021;226:117519. doi:10.1016/j.neuroimage.2020.117519
  • Wintermute EH, Cisel M, Lindner AB. A survival model for course-course interactions in a Massive Open Online Course platform. PLoS One. 2021;16(1):e0245718. doi:10.1371/journal.pone.0245718
  • Ceccaroni L, Woods SM, Sprinks J, et al. Citizen Science, Health, and Environmental Justice. In: Vohland K, Land-Zandstra A, Ceccaroni L, et al., eds. The Science of Citizen Science. Springer International Publishing; 2021:219-239. Accessed March 17, 2021. https://doi.org/10.1007/978-3-030-58278-4_12
  • Both G-J, Choudhury S, Sens P, Kusters R. DeepMoD: Deep learning for Model Discovery in noisy data. Journal of Computational Physics. 2021;428:109985.

2020

  • Haklay M, Fraisl D, Tzovaras BG, et al. Contours of Citizen Science: A Vignette Study. SocArXiv; 2020. Accessed March 17, 2021. https://osf.io/preprints/socarxiv/6u2ky/
  • Jove V, Gong Z, Hol FJH, et al. Sensory Discrimination of Blood and Floral Nectar by Aedes aegypti Mosquitoes. Neuron. 2020;108(6). doi:10.1016/j.neuron.2020.09.019
  • Williams CM, Peyre H, Toro R, Beggiato A, Ramus F. Adjusting for allometric scaling inABIDEI challenges subcortical volume differences in autism spectrum disorder. Hum Brain Mapp. 2020;41(16):4610-4629. doi:10.1002/hbm.25145
  • Bedford FL, Greshake Tzovaras B. Re-analysis of genetic risks for Chronic Fatigue Syndrome from 23andMe data finds few remain. medRxiv. Published online October 31, 2020:2020.10.27.20220939. doi:10.1101/2020.10.27.20220939
  • Provini P. Hop to it. New Scientist. 2020;245(3305):54-54.
  • Liang B, Quan B, Li J, et al. Artificial modulation of cell width significantly affects the division time of Escherichia coli. Sci Rep. 2020;10(1):17847. doi:10.1038/s41598-020-74778-3
  • Berthelot G, Tupikina L, Kang M-Y, Sapoval B, Grebenkov DS. Pseudo-Darwinian evolution of physical flows in complex networks. Sci Rep. 2020;10(1):15477. doi:10.1038/s41598-020-72379-8
  • Hol FJH, Lambrechts L, Prakash M. BiteOscope, an open platform to study mosquito biting behavior. eLife. 2020;9:e56829. doi:10.7554/eLife.56829
  • Provini P, Hofling E. To Hop or Not to Hop? The Answer Is in the Bird Trees. Systematic Biology. 2020;69(5):962-972. doi:10.1093/sysbio/syaa015
  • Peyre H, Mohanpuria N, Jednorog K, et al. Neuroanatomy of dyslexia: An allometric approach. Eur J Neurosci. 2020;52(6):3595-3609. doi:10.1111/ejn.14690
  • Bafeta A, Bobe J, Clucas J, et al. Ten simple rules for open human health research. PLoS Comput Biol. 2020;16(9):e1007846. doi:10.1371/journal.pcbi.1007846
  • Tillmann J, Uljarevic M, Crawley D, et al. Dissecting the phenotypic heterogeneity in sensory features in autism spectrum disorder: a factor mixture modelling approach. Mol Autism. 2020;11(1):67. doi:10.1186/s13229-020-00367-w
  • Naret O, Baranger DA, Mohanty SP, et al. Phenotype prediction from genome-wide genotyping data: a crowdsourcing experiment. bioRxiv. Published online August 25, 2020:2020.08.25.265900. doi:10.1101/2020.08.25.265900
  • Banderas A, Carcano A, Sia E, Li S, Lindner AB. Ratiometric quorum sensing governs the trade-off between bacterial vertical and horizontal antibiotic resistance propagation. PLoS Biol. 2020;18(8):e3000814. doi:10.1371/journal.pbio.3000814
  • Marinkovic ZS, Vulin C, Acman M, et al. Observing Nutrient Gradients, Gene Expression and Growth Variation Using the “Yeast Machine” Microfluidic Device. Bio-protocol. 2020;10(13):e3668. doi:10.21769/BioProtoc.3668
  • Bertizzolo L, Bossuyt PM, Atal I, Ravaud P, Dechartres A. External factors may influence Cochrane reviewers when classifying the risk of bias of original reports. J Clin Epidemiol. 2020;123:1-8. doi:10.1016/j.jclinepi.2020.03.008
  • Iudici M, Puechal X, Brigante A, Atal I, Gabay C. Randomized clinical trials in ANCA-associated vasculitis: a systematic analysis of the WHO-International Clinical Trials Registry Platform. Orphanet J Rare Dis. 2020;15(1):130. doi:10.1186/s13023-020-01408-6
  • Lehman J, Clune J, Misevic D, et al. The Surprising Creativity of Digital Evolution: A Collection of Anecdotes from the Evolutionary Computation and Artificial Life Research Communities. Artif Life. 2020;26(2):274-306. doi:10.1162/artl_a_00319
  • Biton A, Traut N, Poline J-B, et al. Polygenic Architecture of Human Neuroanatomical Diversity (vol 30, pg 2307, 2020). Cereb Cortex. 2020;30(5):3435-3436. doi:10.1093/cercor/bhaa093
  • Tennant JP, Bielczyk N, Tzovaras BG, Masuzzo P, Steiner T. Introducing Massively Open Online Papers (MOOPs). KULA. 2020;4:1-1. doi:10.5334/kula.63
  • Greshake Tzovaras B, Segers FHID, Bicker A, et al. What Is in Umbilicaria pustulata? A Metagenomic Approach to Reconstruct the Holo-Genome of a Lichen. Genome Biology and Evolution. 2020;12(4):309-324. doi:10.1093/gbe/evaa049
  • Cauvet E, van’t Westeinde A, Toro R, et al. The social brain in female autism: a structural imaging study of twins. Soc Cogn Affect Neurosci. 2020;15(4):423-436. doi:10.1093/scan/nsaa064
  • Biton A, Traut N, Poline J-B, et al. Polygenic Architecture of Human Neuroanatomical Diversity. Cereb Cortex. 2020;30(4):2307-2320. doi:10.1093/cercor/bhz241
  • Linneweber GA, Andriatsilavo M, Dutta SB, et al. A neurodevelopmental origin of behavioral individuality in the Drosophila visual system. Science. 2020;367(6482):1112-+. doi:10.1126/science.aaw7182
  • Yusuf M, Atal I, Li J, et al. Reporting quality of studies using machine learning models for medical diagnosis: a systematic review. BMJ Open. 2020;10(3):e034568. doi:10.1136/bmjopen-2019-034568
  • Provini P. Birdsong for human(e) voices: Building efficient voice prostheses inspired from bird vocal system. Integrative and Comparative Biology. 2020;60:E191-E191.
  • Cury C, Scelsi MA, Toro R, et al. Genome wide association study of incomplete hippocampal inversion in adolescents. PLoS One. 2020;15(1):e0227355. doi:10.1371/journal.pone.0227355
  • Kilic A, Ameli A, Park J-A, et al. Mechanical forces induce an asthma gene signature in healthy airway epithelial cells. Scientific Reports. 2020;10(1):966. doi:10.1038/s41598-020-57755-8
  • Iudici M, Bafeta A, Atal I, Ravaud P. Ten Years of Interventional Research in Systemic Sclerosis: A Systematic Mapping of Trial Registries. Arthritis Care Res. 2020;72(1):140-148. doi:10.1002/acr.23817
  • Grizou J, Points LJ, Sharma A, Cronin L. A curious formulation robot enables the discovery of a novel protocell behavior. Science Advances. 2020;6(5):eaay4237. doi:10.1126/sciadv.aay4237
  • Poquet O, Tupikina L, Santolini M. Are Forum Networks Social Networks? A Methodological Perspective. Assoc Computing Machinery; 2020:366-375. doi:10.1145/3375462.3375531
  • Kusters R, Misevic D, Berry H, et al. Interdisciplinary Research in Artificial Intelligence: Challenges and Opportunities. Frontiers in Big Data. 2020;3:45.
  • Kariotis T, Ball MP, Tzovaras BG, et al. Emerging health data platforms: From individual control to collective data governance. Data & Policy. 2020;2. doi:10.1017/dap.2020.14
  • Huron C. Developmental coordination disorder. La Revue du Praticien. 2020;70(6):683-686.
  • Gomez A, Huron C. Subitizing and counting impairments in children with developmental coordination disorder. Research in Developmental Disabilities. 2020;104:103717.
  • Both G-J, Kusters R. Sparsely constrained neural networks for model discovery of PDEs. arXiv preprint arXiv:201104336. Published online 2020.
  • Abou-Ghali M, Kusters R, Körber S, et al. Capping protein is dispensable for polarized actin network growth and actin-based motility. Journal of Biological Chemistry. 2020;295(45):15366-15375.

2019

  • van’t Westeinde A, Cauvet E, Toro R, et al. Sex differences in brain structure: a twin study on restricted and repetitive behaviors in twin pairs with and without autism. Mol Autism. 2019;11(1):1. doi:10.1186/s13229-019-0309-x
  • Heuer K, Toro R. Role of mechanical morphogenesis in the development and evolution of the neocortex. Phys Life Rev. 2019;31:233-239. doi:10.1016/j.plrev.2019.01.012
  • DiFrisco J, Jaeger J. Beyond networks: mechanism and process in evo-devo. Biology & Philosophy. 2019;34(6):54. doi:10.1007/s10539-019-9716-9
  • Albaret J-M, Arnaud C, Assaiante C, et al. Trouble développemental de la coordination ou dyspraxie. EDP Sciences; 2019. https://hal.univ-grenoble-alpes.fr/hal-02408788
  • Abourachid A, Castro I, Provini P. How to walk carrying a huge egg? Trade-offs between locomotion and reproduction explain the special pelvis and leg anatomy in kiwi (Aves; Apteryx spp.). Journal of Anatomy. 2019;235(6):1045-1056. doi:10.1111/joa.13072
  • Satizabal CL, Adams HHH, Hibar DP, et al. Genetic architecture of subcortical brain structures in 38,851 individuals. Nature Genet. 2019;51(11):1624-+. doi:10.1038/s41588-019-0511-y
  • Knibbe C, Beslon G, Misevic D. Introduction to the ECAL 2017 Special Issue. Artif Life. 2019;25(4):313-314. doi:10.1162/artl_a_00298
  • Jones JAB, Nash UW, Vieillefont J, Christensen K, Misevic D, Steiner UK. The AgeGuess database, an open online resource on chronological and perceived ages of people aged 5-100. Sci Data. 2019;6:246. doi:10.1038/s41597-019-0245-9
  • Warrier V, Toro R, Won H, et al. Social and non-social autism symptoms and trait domains are genetically dissociable. Commun Biol. 2019;2:328. doi:10.1038/s42003-019-0558-4
  • Singh V, Jolly B, Rajput NK, Pramanik S, Bhardwaj A. MtBrowse: An integrative genomics browser for human mitochondrial DNA. Mitochondrion. 2019;48:31-36. doi:10.1016/j.mito.2019.02.003
  • Katselas A, Motion A, O’Reilly C, Neto C. Chemical Curiosity on Campus: An Undergraduate Project on the Structure and Wettability of Natural Surfaces. Journal of Chemical Education. 2019;96(9):1998-2002. doi:10.1021/acs.jchemed.9b00324
  • Heuer K, Gulban OF, Bazin P-L, et al. Evolution of neocortical folding: A phylogenetic comparative analysis of MRI from 34 primate species. Cortex. 2019;118:275-291. doi:10.1016/j.cortex.2019.04.011
  • Foubet O, Trejo M, Toro R. Mechanical morphogenesis and the development of neocortical organisation. Cortex. 2019;118:315-326. doi:10.1016/j.cortex.2018.03.005
  • Mordret E, Dahan O, Asraf O, et al. Systematic Detection of Amino Acid Substitutions in Proteomes Reveals Mechanistic Basis of Ribosome Errors and Selection for Translation Fidelity. Mol Cell. 2019;75(3):427-+. doi:10.1016/j.molcel.2019.06.041
  • Hol FJH, Whitesides GM, Dekker C. Bacteria-in-paper, a versatile platform to study bacterial ecology. Ecol Lett. 2019;22(8):1316-1323. doi:10.1111/ele.13274
  • Tabet A-C, Rolland T, Ducloy M, et al. A framework to identify contributing genes in patients with Phelan-McDermid syndrome (vol 2, 32, 2017). npj Genom Med. 2019;4:16. doi:10.1038/s41525-019-0090-y
  • Marinkovic ZS, Vulin C, Acman M, et al. A microfluidic device for inferring metabolic landscapes in yeast monolayer colonies. eLife. 2019;8:e47951. doi:10.7554/eLife.47951
  • Walton E, Hibar D, Yilmaz Z, et al. Exploration of Shared Genetic Architecture Between Subcortical Brain Volumes and Anorexia Nervosa. Mol Neurobiol. 2019;56(7):5146-5156. doi:10.1007/s12035-018-1439-4
  • Atal I, Porcher R, Boutron I, Ravaud P. The statistical significance of meta-analyses is frequently fragile: definition of a fragility index for meta-analyses. J Clin Epidemiol. 2019;111:32-40. doi:10.1016/j.jclinepi.2019.03.012
  • Verd B, Monk NAM, Jaeger J. Modularity, criticality, and evolvability of a developmental gene regulatory network. Elife. 2019;8:e42832. doi:10.7554/eLife.42832
  • Kang M-Y, Berthelot G, Tupikina L, et al. Morphological organization of point-to-point transport in complex networks. Sci Rep. 2019;9:8322. doi:10.1038/s41598-019-44701-6
  • Provini P, Brunet A, Van Wassenbergh S. 3D-X-ray Particle Tracking Method: Inside a Fish’s Mouth During Suction Feeding. Journal of Morphology. 2019;280:S57-S57.
  • Greshake Tzovaras B, Angrist M, Arvai K, et al. Open Humans: A platform for participant-centered research and personal data exploration. GigaScience. 2019;8(6). doi:10.1093/gigascience/giz076
  • Duros V, Grizou J, Sharma A, et al. Intuition-Enabled Machine Learning Beats the Competition When Joint Human-Robot Teams Perform Inorganic Chemical Experiments. Journal of Chemical Information and Modeling. 2019;59(6):2664-2671. doi:10.1021/acs.jcim.9b00304
  • Bertizzolo L, Bossuyt P, Atal I, Ravaud P, Dechartres A. Disagreements in risk of bias assessment for randomised controlled trials included in more than one Cochrane systematic reviews: a research on research study using cross-sectional design. BMJ Open. 2019;9(4):e028382. doi:10.1136/bmjopen-2018-028382
  • Yang Y, Santos AL, Xu L, Lotton C, Taddei F, Lindner AB. Temporal scaling of aging as an adaptive strategy of Escherichia coli. Sci Adv. 2019;5(5):eaaw2069. doi:10.1126/sciadv.aaw2069
  • Tillmann J, Caceres ASJ, Chatham CH, et al. Investigating the factors underlying adaptive functioning in autism in the EU-AIMS Longitudinal European Autism Project. Autism Res. 2019;12(4):645-657. doi:10.1002/aur.2081
  • Steiner UK, Lenart A, Ni M, et al. Two stochastic processes shape diverse senescence patterns in a single-cell organism. Evolution. 2019;73(4):847-857. doi:10.1111/evo.13708
  • Lerner I, Crequit P, Ravaud P, Atal I. Automatic screening using word embeddings achieved high sensitivity and workload reduction for updating living network meta-analyses. J Clin Epidemiol. 2019;108:86-94. doi:10.1016/j.jclinepi.2018.12.001
  • Provini P, Brunet A, Van Wassenbergh S. Intra-Oral Hydrodynamics of Suction Feeding in Fishes. Integrative and Comparative Biology. 2019;59:E186-E186.
  • Oldehinkel M, Mennes M, Marquand A, et al. Altered Connectivity Between Cerebellum, Visual, and Sensory-Motor Networks in Autism Spectrum Disorder: Results from the EU-AIMS Longitudinal European Autism Project. Biol Psychiat-Cogn Neurosci Neuroimag. 2019;4(3):260-270. doi:10.1016/j.bpsc.2018.11.010
  • Cauvet E, van’t Westeinde A, Toro R, et al. Sex Differences Along the Autism Continuum: A Twin Study of Brain Structure. Cereb Cortex. 2019;29(3):1342-1350. doi:10.1093/cercor/bhy303
  • Castells-Nobau A, Eidhof I, Fenckova M, et al. Conserved regulation of neurodevelopmental processes and behavior by FoxP in Drosophila. PLoS One. 2019;14(2):e0211652. doi:10.1371/journal.pone.0211652
  • Maruani A, Dumas G, Beggiato A, et al. Morning Plasma Melatonin Differences in Autism: Beyond the Impact of Pineal Gland Volume. Front Psychiatry. 2019;10:11. doi:10.3389/fpsyt.2019.00011
  • Bafeta A, Koh M, Riveros C, Ravaud P. Harms Reporting in Randomized Controlled Trials of Interventions Aimed at Modifying Microbiota RESPONSE. Ann Intern Med. 2019;170(2):143-144. doi:10.7326/L18-0562
  • Warrier V, Toro R, Chakrabarti B, et al. SOCIAL AND NON-SOCIAL DOMAINS OF AUTISM ARE GENETICALLY DISSOCIABLE. Eur Neuropsychopharmacol. 2019;29:1197-1198. doi:10.1016/j.euroneuro.2018.08.241
  • Voillot M, Bevilacqua F, Chevrier J, Eliot C. Exploring Embodied Learning for Early Childhood Education. Assoc Computing Machinery; 2019:747-750. doi:10.1145/3311927.3325347
  • Simon C, Kusters R, Caorsi V, et al. Actin dynamics drive cell-like membrane deformation. Nature Physics. 2019;15(6):602-609.
  • Pernier J, Kusters R, Bousquet H, et al. Myosin 1b is an actin depolymerase. Nature communications. 2019;10(1):1-7.
  • Mukundarajan H, Konte R, Hol FJ, et al. ABUZZ : A MOBILE PHONE BASED CITIZEN SCIENCE PLATFORM FOR CROWDSOURCING ECOLOGICAL DATA FOR MOSQUITO SURVEILLANCE. Am J Trop Med Hyg. 2019;101:448-448.
  • Mueller GB, Jaeger J, Pradeu T, Schafer K. Evolutionary Causation Biological and Philosophical Reflections Series Foreword. (Uller T, Laland KN, eds.).; 2019:VII-VII.
  • Mueller GB, Jaeger J, Pradeu T, Schaefer K. Convergent Evolution on Earth Lessons for the Search for Extraterrestrial Life Series Foreword.; 2019:XI-+.
  • Michaels TC, Kusters R, Dear AJ, Storm C, Weaver JC, Mahadevan L. Geometric localization in supported elastic struts. Proceedings of the Royal Society A. 2019;475(2229):20190370.
  • Kusters R, Simon C, Dos Santos RL, et al. Actin shells control buckling and wrinkling of biomembranes. Soft Matter. 2019;15(47):9647-9653.
  • Kumar S, Hol F, Prakash M. VECTOR CHIP: A MINIATURIZED PLATFORM FOR HIGH-THROUGHPUT INTERROGATION OF MOSQUITO-PATHOGEN DYNAMICS. Am J Trop Med Hyg. 2019;101:421-422.
  • Huguet G, Schramm C, Douard E, et al. QUANTIFYING THE EFFECT OF COPY-NUMBER VARIANTS ON GENERAL INTELLIGENCE IN UNSELECTED POPULATIONS. Eur Neuropsychopharmacol. 2019;29:S848-S848. doi:10.1016/j.euroneuro.2017.08.119
  • Hol FJ, Zanini F. LINKING DENGUE VIRAL GENOMICS AND HOST CELL TRANSCRIPTOMICS IN SINGLE CELLS. Am J Trop Med Hyg. 2019;101:254-255.
  • Hol FJ, Lambrechts L, Prakash M. BITES, BLOOD AND BEHAVIOR: BIOPHYSICAL APPROACHES TO UNDERSTANDING MOSQUITO BLOOD-FEEDING BEHAVIOR. Am J Trop Med Hyg. 2019;101:444-444.
  • Greshake Tzovaras B, Tzovara A. The Personal Data Is Political. The Ethics of Medical Data Donation. 2019;137. Accessed March 17, 2021. http://link.springer.com/10.1007/978-3-030-04363-6
  • Donner RV, Lindner M, Tupikina L, Molkenthin N. Characterizing Flows by Complex Network Methods. In: Macau EEN, ed. Mathematical Modeling Approach from Nonlinear Dynamics to Complex Systems. Vol 22. Springer International Publishing Ag; 2019:197-226. doi:10.1007/978-3-319-78512-7_11
  • Delettre C, Messe A, Dell L-A, et al. Comparison between diffusion MRI tractography and histological tract-tracing of cortico-cortical structural connectivity in the ferret brain. Netw Neurosci. 2019;3(4):1038-1050. doi:10.1162/netn_a_00098
  • Both G-J, Kusters R. Temporal Normalizing Flows. arXiv preprint arXiv:191209092. Published online 2019.

2018

  • Holme P, Tupikina L. Epidemic extinction in networks: insights from the 12110 smallest graphs. New J Phys. 2018;20:113042. doi:10.1088/1367-2630/aaf016
  • Cury C, Glaunes JA, Toro R, et al. Statistical Shape Analysis of Large Datasets Based on Diffeomorphic Iterative Centroids. Front Neurosci. 2018;12:803. doi:10.3389/fnins.2018.00803
  • Gershman SJ, Tzovaras BG. Dopaminergic genes are associated with both directed and random exploration. Neuropsychologia. 2018;120:97-104. doi:10.1016/j.neuropsychologia.2018.10.009
  • Zeitoun J-D, Ross JS, Atal I, et al. Factors Associated With Postmarketing Research for Approved Indications for Novel Medicines Approved by Both the FDA and EMA Between 2005 and 2010: A Multivariable Analysis. Clin Pharmacol Ther. 2018;104(5):1000-1007. doi:10.1002/cpt.1038
  • Haeusermann T, Fadda M, Blasimme A, Tzovaras BG, Vayena E. Genes wide open: Data sharing and the social gradient of genomic privacy. AJOB Empirical Bioethics. 2018;9(4):207-221. doi:10.1080/23294515.2018.1550123
  • Lefebvre A, Delorme R, Delanoe C, et al. Alpha Waves as a Neuromarker of Autism Spectrum Disorder: The Challenge of Reproducibility and Heterogeneity. Front Neurosci. 2018;12:662. doi:10.3389/fnins.2018.00662
  • Sharma A, Kitsak M, Cho MH, et al. Integration of Molecular Interactome and Targeted Interaction Analysis to Identify a COPD Disease Network Module. Scientific Reports. 2018;8:14439. doi:10.1038/s41598-018-32173-z
  • Rees CM, Yang J-H, Santolini M, Lusis AJ, Weiss JN, Karma A. The Ca2+ transient as a feedback sensor controlling cardiomyocyte ionic conductances in mouse populations. Elife. 2018;7:e36717. doi:10.7554/eLife.36717
  • Dechartres A, Atal I, Riveros C, Meerpohl J, Ravaud P. Association Between Publication Characteristics and Treatment Effect Estimates A Meta-epidemiologic Study. Ann Intern Med. 2018;169(6):385-+. doi:10.7326/M18-1517
  • Tran N-V, Greshake Tzovaras B, Ebersberger I. PhyloProfile: dynamic visualization and exploration of multi-layered phylogenetic profiles. Bioinformatics. 2018;34(17):3041-3043. doi:10.1093/bioinformatics/bty225
  • Provini P, Van Wassenbergh S. Hydrodynamic performance of suction feeding is virtually unaffected by variation in the shape of the posterior region of the pharynx in fish. Royal Society Open Science. 2018;5(9):181249. doi:10.1098/rsos.181249
  • Bafeta A, Koh M, Riveros C, Ravaud P. Harms Reporting in Randomized Controlled Trials of Interventions Aimed at Modifying Microbiota A Systematic Review. Ann Intern Med. 2018;169(4):240-+. doi:10.7326/M18-0343
  • Bonnet A, Levy-Leduc C, Gassiat E, Toro R, Bourgeron T. Improving heritability estimation by a variable selection approach in sparse high dimensional linear mixed models. J R Stat Soc Ser C-Appl Stat. 2018;67(4):813-839. doi:10.1111/rssc.12261
  • Sharma A, Halu A, Decano JL, et al. Controllability in an islet specific regulatory network identifies the transcriptional factor NFATC4, which regulates Type 2 Diabetes associated genes. Npj Systems Biology and Applications. 2018;4:25. doi:10.1038/s41540-018-0057-0
  • Santolini M, Barabasi A-L. Predicting perturbation patterns from the topology of biological networks. Proceedings of the National Academy of Sciences of the United States of America. 2018;115(27):E6375-E6383. doi:10.1073/pnas.1720589115
  • Yordanov Y, Dechartres A, Atal I, et al. Avoidable waste of research related to outcome planning and reporting in clinical trials. BMC Med. 2018;16:87. doi:10.1186/s12916-018-1083-x
  • Kilic A, Santolini M, Nakano T, et al. A systems immunology approach identifies the collective impact of 5 miRs in Th2 inflammation. Jci Insight. 2018;3(11):e97503. doi:10.1172/jci.insight.97503
  • Atal I, Trinquart L, Ravaud P, Porcher R. A mapping of 115,000 randomized trials revealed a mismatch between research effort and health needs in non high-income regions. J Clin Epidemiol. 2018;98:123-132. doi:10.1016/j.jclinepi.2018.01.006
  • Passi A, Rajput NK, Wild DJ, Bhardwaj A. RepTB: a gene ontology based drug repurposing approach for tuberculosis. J Cheminformatics. 2018;10:24. doi:10.1186/s13321-018-0276-9
  • Benchoufi M, Fournier M, Magrez D, et al. Epidemium: A multidisciplinary community to tackle cancer using big and open data. Journal of Clinical Oncology. 2018;36(15). doi:10.1200/JCO.2018.36.15_suppl.e13604
  • Huguet G, Schramm C, Douard E, et al. Measuring and Estimating the Effect Sizes of Copy Number Variants on General Intelligence in Community-Based Samples. JAMA Psychiatry. 2018;75(5):447-457. doi:10.1001/jamapsychiatry.2018.0039
  • Grande FD, Meiser A, Tzovaras BG, Otte J, Ebersberger I, Schmitt I. The draft genome of the lichen-forming fungus Lasallia hispanica (Frey) Sancho & A. Crespo. The Lichenologist. 2018;50(3):329-340. doi:10.1017/S002428291800021X
  • Mora N, Oliva C, Fiers M, et al. A Temporal Transcriptional Switch Governs Stem Cell Division, Neuronal Numbers, and Maintenance of Differentiation. Dev Cell. 2018;45(1):53-+. doi:10.1016/j.devcel.2018.02.023
  • Traut N, Beggiato A, Bourgeron T, et al. Cerebellar Volume in Autism: Literature Meta-analysis and Analysis of the Autism Brain Imaging Data Exchange Cohort. Biol Psychiatry. 2018;83(7):579-588. doi:10.1016/j.biopsych.2017.09.029
  • Warrier V, Toro R, Chakrabarti B, et al. Genome-wide analyses of self-reported empathy: correlations with autism, schizophrenia, and anorexia nervosa. Transl Psychiatr. 2018;8:35. doi:10.1038/s41398-017-0082-6
  • Provini P, Van Wassenbergh S. Suction outflow dynamics in fishes: effects of the shape of the pharynx and pectoral region of the body. Integrative and Comparative Biology. 2018;58:E181-E181.
  • Provini P, Hofling E. Evolution of Hopping and Arboreality in Neotropical Birds. Integrative and Comparative Biology. 2018;58:E399-E399.
  • Santolini M, Romay MC, Yukhtman CL, et al. A personalized, multiomics approach identifies genes involved in cardiac hypertrophy and heart failure. Npj Systems Biology and Applications. 2018;4:12. doi:10.1038/s41540-018-0046-3
  • Himmelstein DS, Romero AR, Levernier JG, et al. Sci-Hub provides access to nearly all scholarly literature. Rodgers PA, ed. eLife. 2018;7:e32822. doi:10.7554/eLife.32822
  • Provini P, Abourachid A. Whole-body 3D kinematics of bird take-off: key role of the legs to propel the trunk. Science of Nature. 2018;105(1-2):12. doi:10.1007/s00114-017-1535-8
  • Zeitoun J-D, Baron G, Vivot A, et al. Post-marketing research and its outcome for novel anticancer agents approved by both the FDA and EMA between 2005 and 2010: A cross-sectional study. Int J Cancer. 2018;142(2):414-423. doi:10.1002/ijc.31061
  • Santos AL, Sinha S, Lindner AB. The Good, the Bad, and the Ugly of ROS: New Insights on Aging and Aging-Related Diseases from Eukaryotic and Prokaryotic Model Organisms. Oxidative Med Cell Longev. 2018;2018:1941285. doi:10.1155/2018/1941285
  • Paykovic A, Andelinovic M, Misevic D. Measuring financial literacy of university students. Croat Oper Res Rev. 2018;9(1):87-97. doi:10.17535/crorr.2018.0008
  • Lehman J, Clune J, Misevic D. The Surprising Creativity of Digital Evolution. (Ikegami T, Virgo N, Witkowski O, Oka M, Suzuki R, Iizuka H, eds.). Mit Press; 2018:55-56.

2017

  • Zeitoun J-D, Ross JS, Atal I, et al. Postmarketing studies for novel drugs approved by both the FDA and EMA between 2005 and 2010: a cross-sectional study. BMJ Open. 2017;7(12):e018587. doi:10.1136/bmjopen-2017-018587
  • Kepa A, Medina LM, Erk S, et al. Associations of the Intellectual Disability Gene MYT1L with Helix-Loop-Helix Gene Expression, Hippocampus Volume and Hippocampus Activation During Memory Retrieval. Neuropsychopharmacology. 2017;42(13):2516-2526. doi:10.1038/npp.2017.91
  • Mukundarajan H, Hol FJ, Castillo EA, Newby C, Prakash M. SHAZAM FOR MOSQUITOES : CROWDSOURCING VECTOR SURVEILLANCE BY USING MOBILE PHONES AS ACOUSTIC SENSORS. Am J Trop Med Hyg. 2017;95(5):16-16.
  • Hol FJ, Mukundarajan H, Prakash M. INTERROGATING MOSQUITO- PATHOGEN COMMUNITIES USING HIGH- THROUGHPUT MICROFLUIDICS. Am J Trop Med Hyg. 2017;95(5):15-15.
  • Mukundarajan H, Hol FJH, Castillo EA, Newby C, Prakash M. Using mobile phones as acoustic sensors for high-throughput mosquito surveillance. eLife. 2017;6:e27854. doi:10.7554/eLife.27854
  • Tabet A-C, Rolland T, Ducloy M, et al. A framework to identify contributing genes in patients with Phelan-McDermid syndrome. npj Genom Med. 2017;2. doi:10.1038/s41525-017-0035-2
  • Warrier V, Grasby K, Uzefovsky F, et al. A META-ANALYSIS OF COGNITIVE EMPATHY: HERITABILITY AND CORRELATES OF THE “READING THE MIND IN THE EYES” TEST WITH PSYCHIATRIC CONDITIONS, PSYCHOLOGICAL TRAITS AND SUBCORTICAL VOLUMES. Eur Neuropsychopharmacol. 2017;27:S503-S504. doi:10.1016/j.euroneuro.2016.09.608
  • Guadalupe T, Mathias SR, Vanerp TGM, et al. Human subcortical brain asymmetries in 15,847 people worldwide reveal effects of age and sex. Brain Imaging Behav. 2017;11(5):1497-1514. doi:10.1007/s11682-016-9629-z
  • Frenoy A, Taddei F, Misevic D. Second-order cooperation: Cooperative offspring as a living public good arising from second-order selection on non-cooperative individuals. Evolution. 2017;71(7):1802-1814. doi:10.1111/evo.13279
  • Loth E, Charman T, Mason L, et al. The EU-AIMS Longitudinal European Autism Project (LEAP): design and methodologies to identify and validate stratification biomarkers for autism spectrum disorders. Mol Autism. 2017;8:24. doi:10.1186/s13229-017-0146-8
  • Charman T, Loth E, Tillmann J, et al. The EU-AIMS Longitudinal European Autism Project (LEAP): clinical characterisation. Mol Autism. 2017;8:27. doi:10.1186/s13229-017-0145-9
  • Dechartres A, Trinquart L, Atal I, et al. Evolution of poor reporting and inadequate methods over time in 20 920 randomised controlled trials included in Cochrane reviews: research on research study. BMJ-British Medical Journal. 2017;357:j2490. doi:10.1136/bmj.j2490
  • Di Martino A, O’Connor D, Chen B, et al. Data Descriptor: Enhancing studies of the connectome in autism using the autism brain imaging data exchange II. Sci Data. 2017;4:170010. doi:10.1038/sdata.2017.10
  • Rau CD, Romay MC, Tuteryan M, et al. Systems Genetics Approach Identifies Gene Pathways and Adamts2 as Drivers of Isoproterenol-Induced Cardiac Hypertrophy and Cardiomyopathy in Mice. Cell Systems. 2017;4(1):121-+. doi:10.1016/j.cels.2016.10.016
  • Hibar DP, Adams HHH, Jahanshad N, et al. Novel genetic loci associated with hippocampal volume. Nat Commun. 2017;8:13624. doi:10.1038/ncomms13624
  • Thompson PM, Andreassen OA, Arias-Vasquez A, et al. ENIGMA and the individual: Predicting factors that affect the brain in 35 countries worldwide. Neuroimage. 2017;145:389-408. doi:10.1016/j.neuroimage.2015.11.057
  • Tennant JP, Graziotin D, Jacques DC, et al. An interdisciplinary perspective on innovations in peer review. F1000Research. Published online 2017:0-2. doi:10.12688/f1000research.12037.1
  • Schell T, Feldmeyer B, Schmidt H, et al. An Annotated Draft Genome for Radix auricularia (Gastropoda, Mollusca). Genome Biology and Evolution. 2017;9(3):585-592. doi:10.1093/gbe/evx032
  • Santos AL, Lindner AB. Protein Posttranslational Modifications: Roles in Aging and Age-Related Disease. Oxidative Med Cell Longev. 2017;2017:5716409. doi:10.1155/2017/5716409
  • Mukundarajan H, Hol F, Castillo E, Newby C, Prakash M. USING MOBILE PHONES AS ACOUSTIC SENSORS FOR HIGH-THROUGHPUT SURVEILLANCE OF MOSQUITO ECOLOGY. Am J Trop Med Hyg. 2017;97(5):21-21.
  • Miermans CA, Kusters RPT, Hoogenraad CC, Storm C. Biophysical model of the role of actin remodeling on dendritic spine morphology. PloS one. 2017;12(2):e0170113.
  • Kusters R, Storm C. Dynamic phase separation of confined driven particles. EPL (Europhysics Letters). 2017;118(5):58004.
  • Haeusermann T, Greshake B, Blasimme A, Irdam D, Richards M, Vayena E. Open sharing of genomic data: Who does it and why? PLoS ONE. 2017;12(5):1-15. doi:10.1371/journal.pone.0177158
  • Grimm DG, Roqueiro D, Salomé PA, et al. easyGWAS: A cloud-based platform for comparing the results of genome-wide association studies. Plant Cell. 2017;29(1). doi:10.1105/tpc.16.00551
  • Greshake B. Looking into Pandora’s Box: The Content of Sci-Hub and its Usage. F1000Research. 2017;6(May):541. doi:10.12688/f1000research.11366.1
  • Gomez A, Piazza M, Jobert A, Dehaene-Lambertz G, Huron C. Numerical abilities of school-age children with Developmental Coordination Disorder (DCD): A behavioral and eye-tracking study. Human movement science. 2017;55:315-326.
  • Fai TG, Kusters R, Harting J, Rycroft CH, Mahadevan L. Active elastohydrodynamics of vesicles in narrow blind constrictions. Physical Review Fluids. 2017;2(11):113601.
  • Dubos A, Bevilacqua F, Larralde J, Chevrier J, Jego J-F. Designing Gestures for Interactive Systems: Towards Multicultural Perspectives. In: Bernhaupt R, Dalvi G, Joshi A, Balkrishan DK, ONeill J, Winckler M, eds. Human-Computer Interaction - Interact 2017, Pt Iv. Vol 10516. Springer International Publishing Ag; 2017:524-526.
  • Adrian M, Kusters R, Storm C, Hoogenraad CC, Kapitein LC. Probing the interplay between dendritic spine morphology and membrane-bound diffusion. Biophysical journal. 2017;113(10):2261-2270.

2016

  • Mirzakhani H, Litonjua AA, McElrath TF, et al. Early pregnancy vitamin D status and risk of preeclampsia. Journal of Clinical Investigation. 2016;126(12):4702-4715. doi:10.1172/JCI89031
  • Adams HHH, Hibar DP, Chouraki V, et al. Novel genetic loci underlying human intracranial volume identified through genome-wide association. Nat Neurosci. 2016;19(12):1569-1582. doi:10.1038/nn.4398
  • Dechartres A, Bond EG, Scheer J, Riveros C, Atal I, Ravaud P. Reporting of statistically significant results at ClinicalTrials.gov for completed superiority randomized controlled trials. BMC Med. 2016;14:192. doi:10.1186/s12916-016-0740-1
  • Oliva C, Soldano A, Mora N, et al. Regulation of Drosophila Brain Wiring by Neuropil Interactions via a Slit-Robo-RPTP Signaling Complex. Dev Cell. 2016;39(2):267-278. doi:10.1016/j.devcel.2016.09.028
  • Santolini M, Sakakibara I, Gauthier M, et al. MyoD reprogramming requires Six1 and Six4 homeoproteins: genome-wide cis-regulatory module analysis. Nucleic Acids Research. 2016;44(18):8621-8640. doi:10.1093/nar/gkw512
  • Atal I, Zeitoun J-D, Neveol A, Ravaud P, Porcher R, Trinquart L. Automatic classification of registered clinical trials towards the Global Burden of Diseases taxonomy of diseases and injuries. BMC Bioinformatics. 2016;17:392. doi:10.1186/s12859-016-1247-7
  • Sakakibara I, Wurmser M, Dos Santos M, et al. Six1 homeoprotein drives myofiber type IIA specialization in soleus muscle. Skeletal Muscle. 2016;6:30. doi:10.1186/s13395-016-0102-x
  • Dechartres A, Ravaud P, Atal I, Riveros C, Boutron I. Association between trial registration and treatment effect estimates: a meta-epidemiological study. BMC Med. 2016;14:100. doi:10.1186/s12916-016-0639-x
  • Dimitriu T, Misevic D, Lotton C, Brown SP, Lindner AB, Taddei F. Indirect Fitness Benefits Enable the Spread of Host Genes Promoting Costly Transfer of Beneficial Plasmids. PLoS Biol. 2016;14(6):e1002478. doi:10.1371/journal.pbio.1002478
  • Craddock RC, Margulies DS, Bellec P, et al. Brainhack: a collaborative workshop for the open neuroscience community. GigaScience. 2016;5:16. doi:10.1186/s13742-016-0121-x
  • Bernheim AG, Libis VK, Lindner AB, Wintermute EH. Phage-mediated Delivery of Targeted sRNA Constructs to Knock Down Gene Expression in E-coli. J Vis Exp. 2016;(109):e53618. doi:10.3791/53618
  • Sarov M, Barz C, Jambor H, et al. A genome-wide resource for the analysis of protein localisation in Drosophila. eLife. 2016;5:e12068. doi:10.7554/eLife.12068
  • Hol FJH, Rotem O, Jurkevitch E, Dekker C, Koster DA. Bacterial predator-prey dynamics in microscale patchy landscapes. Proc R Soc B-Biol Sci. 2016;283(1824):20152154. doi:10.1098/rspb.2015.2154
  • Hol FJH, Hubert B, Dekker C, Keymer JE. Density-dependent adaptive resistance allows swimming bacteria to colonize an antibiotic gradient. ISME J. 2016;10(1):30-38. doi:10.1038/ismej.2015.107
  • Ziege M, Bierbach D, Bischoff S, et al. Importance of latrine communication in European rabbits shifts along a rural-to-urban gradient. BMC Ecology. 2016;16(1). doi:10.1186/s12898-016-0083-y
  • Yang Y, Song X, Lindner AB. Time-lapse microscopy and image analysis of Escherichia coli cells in mother machines. In: Harwood C, Jensen GJ, eds. Imaging Bacterial Molecules, Structures and Cells. Vol 43. Elsevier Academic Press Inc; 2016:49-68. doi:10.1016/bs.mim.2016.10.003
  • Paquay S, Kusters R. A method for molecular dynamics on curved surfaces. Biophysical journal. 2016;110(6):1226-1233.
  • Misevic D, Frenoy A, Lindner AB, Taddei F. Shape matters in cooperation. In: Gershenson C, Froese T, Siqueiros JM, Aguilar W, Izquierdo E, Sayama H, eds. Alife 2016, the Fifteenth International Conference on the Synthesis and Simulation of Living Systems. Mit Press; 2016:340-341.
  • Lutsak T, Fernández-Mendoza F, Greshake B, et al. Characterization of Microsatellite Loci in the Lichen-Forming Fungus Cetraria aculeata (Parmeliaceae, Ascomycota). Applications in Plant Sciences. 2016;4(9):1600047. doi:10.3732/apps.1600047
  • Greshake B, Zehr S, Dal Grande F, Meiser A, Schmitt I, Ebersberger I. Potential and pitfalls of eukaryotic metagenome skimming: A test case for lichens. Molecular Ecology Resources. 2016;16(2). doi:10.1111/1755-0998.12463

2015

  • Cury C, Toro R, Cohen F, et al. Incomplete Hippocampal Inversion: A Comprehensive MRI Study of Over 2000 Subjects. Front Neuroanat. 2015;9:160. doi:10.3389/fnana.2015.00160
  • Atal I, Trinquart L, Porcher R, Ravaud P. Differential Globalization of Industry- and Non-Industry-Sponsored Clinical Trials. PLoS One. 2015;10(12):e0145122. doi:10.1371/journal.pone.0145122
  • Maruani A, Huguet G, Beggiato A, et al. 11q24.2-25 Micro-Rearrangements in Autism Spectrum Disorders: Relation to Brain Structures. Am J Med Genet A. 2015;167(12):3019-3030. doi:10.1002/ajmg.a.37345
  • Izard J, Balderas CDCG, Ropers D, et al. A synthetic growth switch based on controlled expression of RNA polymerase. Mol Syst Biol. 2015;11(11):840. doi:10.15252/msb.20156382
  • Marinkovic Z, Vulin C, Lindner A, Hersen P. Growing together: From a single cell to the self-organized 2D multicellular assembly. Yeast. 2015;32:S253-S254.
  • Lefebvre A, Beggiato A, Bourgeron T, Toro R. Neuroanatomical Diversity of Corpus Callosum and Brain Volume in Autism: Meta-analysis, Analysis of the Autism Brain Imaging Data Exchange Project, and Simulation. Biol Psychiatry. 2015;78(2):126-134. doi:10.1016/j.biopsych.2015.02.010
  • Boisgontier J, Beggiato A, Toro R, et al. Fronto-occipital Disconnectivity as a Familial Risk Marker of Autism Spectrum Disorder. Biol Psychiatry. 2015;77(9):363S-364S.
  • Hibar DP, Stein JL, Renteria ME, et al. Common genetic variants influence human subcortical brain structures. Nature. 2015;520(7546):224-U216. doi:10.1038/nature14101
  • Misevic D, Frenoy A, Lindner AB, Taddei F. Shape matters: Lifecycle of cooperative patches promotes cooperation in bulky populations. Evolution. 2015;69(3):788-802. doi:10.1111/evo.12616
  • Vayena E, Brownsword R, Edwards SJ, et al. Research led by participants: a new social contract for a new kind of research. Journal of Medical Ethics. Published online 2015:medethics-2015-102663. doi:10.1136/medethics-2015-102663
  • Kusters R, Paquay S, Storm C. Confinement without boundaries: anisotropic diffusion on the surface of a cylinder. Soft Matter. 2015;11(6):1054-1057.
  • Kusters R, Lin H-K, Zandi R, Tsvetkova I, Dragnea B, van der Schoot P. Role of charge regulation and size polydispersity in nanoparticle encapsulation by viral coat proteins. The Journal of Physical Chemistry B. 2015;119(5):1869-1880.
  • Feldmeyer B, Greshake B, Funke E, Ebersberger I, Pfenninger M. Positive selection in development and growth rate regulation genes involved in species divergence of the genus Radix. BMC Evolutionary Biology. 2015;15(1):164. doi:10.1186/s12862-015-0434-x
  • Escalera S, Fabian J, Pardo P, et al. ChaLearn Looking at People 2015: Apparent Age and Cultural Event Recognition Datasets and Results. Ieee; 2015:243-251. doi:10.1109/ICCVW.2015.40
  • Corpas M, Valdivia-Granda W, Torres N, et al. Crowdsourced direct-to-consumer genomic analysis of a family quartet. BMC Genomics. 2015;16(1). doi:10.1186/s12864-015-1973-7
  • Libis VK, Bernheim AG, Basier C, et al. Silencing of Antibiotic Resistance in E. coli with Engineered Phage Bearing Small Regulatory RNAs. ACS Synth Biol. 2014;3(12):1003-1006. doi:10.1021/sb500033d
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